PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000273.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 208aa    MW: 22673.3 Da    PI: 9.6317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000273.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63e-1884132355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr++  +g+WvAeIr+p   + r  r++lg+f  a eAa a+++a+ +++g
  Itr_sc000273.1_g00004.1  84 YRGVRQRT-WGKWVAEIREP---N-RgSRIWLGTFTNALEAALAYDEAAIAMYG 132
                              9****999.**********8...3.35***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.1E-3583146IPR001471AP2/ERF domain
PfamPF008475.4E-1283132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-3083141IPR001471AP2/ERF domain
PROSITE profilePS5103221.11483140IPR001471AP2/ERF domain
CDDcd000183.84E-3083141No hitNo description
SuperFamilySSF541713.4E-2084140IPR016177DNA-binding domain
PRINTSPR003672.4E-98495IPR001471AP2/ERF domain
PRINTSPR003672.4E-9106122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MMDACDQVSN GVSSVVDCPE KKRSKKKGDI SKNVAEVLAK WKEHNANLNS MADGQTTSRK  60
IAAKGSKKGC MKGKGGPENH RVNYRGVRQR TWGKWVAEIR EPNRGSRIWL GTFTNALEAA  120
LAYDEAAIAM YGTRARLNLP NYSLSRQSLK NSSSSLTELD SRSASSPSEA TTVVQCSDKG  180
SSSNLGYCDE SQDVTATGPH DWIKIPEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-1983140563ATERF1
3gcc_A1e-1983140563ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460156.16e-57PREDICTED: putative dehydration-responsive element-binding protein 2H
SwissprotA2WL196e-48DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A
SwissprotQ0JQF77e-48DRE2A_ORYSJ; Dehydration-responsive element-binding protein 2A
TrEMBLA0A0A7MAR01e-57A0A0A7MAR0_9FABA; DREB1
STRINGPGSC0003DMT4000615413e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.23e-28DRE-binding protein 2A